Getting Started

Requirements

• Python
• Python modules:
  • numpy
  • pandas
  • biopython
  • cython
• C, C++ compilers (Mac users need Xcode Command Line Tools)
• zlib (needed for Sickle)
• PURC

Installation

git clone https://github.com/pblischak/fluidigm2puc.git
cd fluidigm2purc
make
sudo make install

The Makefile will clone Sickle and FLASH2 from GitHub and will compile them from source into a folder called deps/. You’ll need to have C and C++ compilers to do this. Typing sudo make install will copy the fluidigm2purc scripts and all of the dependencies to /usr/local/bin so that you can run everything from anywhere on your computer.